StructureAlign

Superposing two proteins to evaluate their structural similarity (support domain alignment)

BreakCheck

Checking whether the input PDB file has a main chain broken

PDB2FAS

Extracting protein sequences from a PDB file and converting to FASTA format

AA-Mutate

Generating the mutated conformation of the selected residue on the input protein

PE-Minimize

Generating the conformation of input protein after energy minimization

PDB-Repair

Fixing atomic missing on the main/side chain of the input protein file

PDB-Split

Splitting the input protein complex into chains

PDB-Assemble

Assembling multiple subunits to protein complex (Depending on the assembly parameters or providing a template structure)

PDB-ReNumber

Modifying the protein chain number or atom number in the protein PDB file

PDB-AddH

Adding hydrogen atoms on a given protein (CHARMM22 defined hydrogen atoms)